Use drupal_add_css with the option 'browsers'.
drupal_add_css(
path_to_theme() . '/ie.css',
array(
'browsers' => array(
'IE' => 'lte IE 9',
'!IE' => FALSE
)
)
);
You should add this function call in your theme's template.php file through template_preprocess_html like this:
function MYTHEME_preprocess_html(&$vars){
drupal_add_css(
path_to_theme() . '/css/ie.css',
array(
'browsers' => array(
'IE' => 'lte IE 9',
'!IE' => FALSE
)
)
);
}