I am embarking on a new project and have decided to use Omega as as my base theme. I have a few related questions to overriding html.tpl.php in my subtheme.
I normally use Modernizr for HTML5 feature detection and to provide the HTML5 Shiv functionality. Are there any problems with replacing the conditional HTML5 Shiv with always including Modernizr? Are any of the features incompatible with the Javascript that Omega provides (like the Media Queries extra)?
Second, I normally place Javascript at the bottom of the page. Will this interfere with any of the JS that Omega relies on?