There are a couple of ways in Drupal 7 to control load/execution order. The simplest is to change the module weight in the system table to get the right order. Unfortunately, this will not work in this case since there is a module and theme involved. Themes always get executed after modules (so UI changes are ensured to happen and not be overwritten).
This means you will probably have to write some code in order to modify the load order. In your [theme.module] file, you will need to implement the Drupal hook: hook_js_alter. E.g. add a