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I delete products and product displays nodes type (both powered by commerce module); then all these node are gone.

After this, I run cron and I get all those (deleted) node back in my site.

How can I trace this problem?

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    Have you used drupal.org/project/feeds to import content into your site? In that case perhaps you have configured your feed to make a import everytime cron runs? In that case I think you should set Minimum refresh period to none. – Cyclonecode Apr 24 '12 at 16:23
  • yes I did. But I just updated all modules, run database update and the problem is no showing up. I'll keep what you said in mind anyway. Thanks. – chefnelone Apr 24 '12 at 18:45
  • You was absolutely right, I had one importer configured to run every 30mins. – chefnelone Apr 24 '12 at 18:59
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Have you used drupal.org/project/feeds to import content into your site? In that case perhaps you have configured your feed to make a import every time cron runs? In that case I think you should set Minimum refresh period to none.

Also, here is a thread facing the same problem: Delete feed, ron cron, feed comes back

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