Is there another way the primary navigation is supposed to printed out besides how it is done in the core system template?
print theme('links__system_main_menu', array('links' => $main_menu));`
None of the changes I made via the
theme_menu_link() function are recognized when the links are printed this way. Are they only seen if I manually put the primary links block into a region?
Which is the function that I could use to override the primary links when printed out this way? Everything I have with
theme_menu_link() does nothing.