I realise that having the .htaccess file in the root of my installation is probably the way the program is designed to run, but I was having some difficulties accessing the site, and then fixed the problem by deleting the .htaccess file in the root. But then it made me wonder if this was a good idea to leave my Drupal 7 installation without a .htaccess file in the root at all.
Is there any security or operational problems if I do not have any .htaccess file in drupal root? I imagine that I would have to put it back in order to enable clean URLs.