I am having problem with Views Accordion when I am using Views Accordion and the Isotope Jquery plugin both on same page.
Isotope Jquery plugin seems to be working fine, but the Views Accordion looks crashed no CSS and functionality is working.
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There is a module called http://drupal.org/project/views_isotope
Using that would be better as it would play well with the rest of the js.
The js behavior with in drupal 7 has changed a bit and placing the js directly might not work well in many cases.