We are using workbench with the subpermissions module. We have created two features which set custom permissions for workbench and for subpermissions. If we install the workbench feature and then the subpermissions feature, both features show as Default and not overwritten. If we install these two features last with a profile, both features show as overridden and the permissions are not correctly set. Any idea why this is happening and how would we investigate?