I have a site built using the Commerce Kickstart profile. Then there are enabled modules provided by the distribution at:
and also there are modules which I added at:
The distribution added some modules: colorbox, entity, etc. in its last version.
The problem is that I already had these modules at sites/all/modules.
The I got those modules duplicated at:
I guess this is wrong. My question is which folder do I have to delete?